Antenna Classification Daily Summary¶

by Josh Dillon last updated October 17, 2022

This notebook parses and summarizes the output of the file_calibration notebook to produce a report on per-antenna malfunctions on a daily basis.

Quick links:

• Summary of Per Antenna Issues¶

• Figure 1: Per File Overall Antenna Classification Summary¶

• Figure 2: Per Classifier Antenna Flagging Summary¶

• Figure 3: Array Visualization of Overall Daily Classification¶

In [1]:
import numpy as np
import pandas as pd
import glob
import os
import matplotlib.pyplot as plt
from hera_cal import io, utils
from hera_qm import ant_class
from uvtools.plot import plot_antpos, plot_antclass
%matplotlib inline
from IPython.display import display, HTML

Settings¶

In [2]:
# Parse settings from environment
ANT_CLASS_FOLDER = os.environ.get("ANT_CLASS_FOLDER", "./")
SUM_FILE = os.environ.get("SUM_FILE", None)
OC_SKIP_OUTRIGGERS = os.environ.get("OC_SKIP_OUTRIGGERS", "TRUE").upper() == "TRUE"

for param in ['ANT_CLASS_FOLDER', 'SUM_FILE', 'OC_SKIP_OUTRIGGERS']:
    print(f"{param} = '{eval(param)}'")

ANT_CLASS_FOLDER = '/mnt/sn1/2459921'
SUM_FILE = '/mnt/sn1/2459921/zen.2459921.42009.sum.uvh5'
OC_SKIP_OUTRIGGERS = 'True'
In [3]:
if SUM_FILE is not None:
    from astropy.time import Time, TimeDelta
    utc = Time(float(SUM_FILE.split('zen.')[-1].split('.sum.uvh5')[0]), format='jd').datetime
    print(f'Date: {utc.month}-{utc.day}-{utc.year}')

Date: 12-7-2022
In [4]:
# set thresholds for fraction of the day
overall_thresh = .1
all_zero_thresh = .1
eo_zeros_thresh = .1
cross_pol_thresh = .1
bad_fem_thresh = .1
high_power_thresh = .1
low_power_thresh = .1
low_corr_thresh = .1
bad_shape_thresh = .5
excess_rfi_thresh = .1
chisq_thresh = .25

Load classifications and other metadata¶

In [5]:
# Load csvs
csv_files = sorted(glob.glob(os.path.join(ANT_CLASS_FOLDER, '*.ant_class.csv')))
jds = [float(f.split('/')[-1].split('zen.')[-1].split('.sum')[0]) for f in csv_files]
tables = [pd.read_csv(f) for f in csv_files]
table_cols = tables[0].columns[1::2]
class_cols = tables[0].columns[2::2]
print(f'Found {len(csv_files)} csv files starting with {csv_files[0]}')

Found 1850 csv files starting with /mnt/sn1/2459921/zen.2459921.21318.sum.ant_class.csv
In [6]:
# parse ant_strings
ap_strs = np.array(tables[0]['Antenna'])
ants = sorted(set(int(a[:-1]) for a in ap_strs))
translator = ''.maketrans('e', 'n') | ''.maketrans('n', 'e')
In [7]:
# get node numbers
node_dict = {ant: 'Unknown' for ant in ants}
try:
    from hera_mc import cm_hookup
    hookup = cm_hookup.get_hookup('default')
    for ant_name in hookup:
        ant = int("".join(filter(str.isdigit, ant_name)))
        if ant in node_dict:
            if hookup[ant_name].get_part_from_type('node')['E<ground'] is not None:
                node_dict[ant] = int(hookup[ant_name].get_part_from_type('node')['E<ground'][1:])
except:
    pass
nodes = sorted(set(node_dict.values()))
In [8]:
def classification_array(col):
    class_array = np.vstack([t[col] for t in tables])
    class_array[class_array == 'good'] = 1.7
    class_array[class_array == 'suspect'] = 1
    class_array[class_array == 'bad'] = 0
    return class_array.astype(float)
In [9]:
if SUM_FILE is not None:
    hd = io.HERADataFastReader(SUM_FILE)
    ap_tuples = [(int(ap[:-1]), {'e': 'Jee', 'n': 'Jnn'}[ap[-1]]) for ap in ap_strs]
    bad_bools = np.mean(classification_array('Antenna Class') == 0, axis=0) > overall_thresh
    bad_aps = [ap_tuples[i] for i in np.arange(len(ap_tuples))[bad_bools]]
    suspect_bools = np.mean(classification_array('Antenna Class') == 1, axis=0) > overall_thresh
    suspect_aps = [ap_tuples[i] for i in np.arange(len(ap_tuples))[suspect_bools] if ap_tuples[i] not in bad_aps]
    good_aps = [ap for ap in ap_tuples if ap not in bad_aps and ap not in suspect_aps]
    overall_class = ant_class.AntennaClassification(bad=bad_aps, suspect=suspect_aps, good=good_aps)
    autos, _, _ = hd.read(bls=[bl for bl in hd.bls if utils.split_bl(bl)[0] == utils.split_bl(bl)[1]], read_flags=False, read_nsamples=False)
    avg_unflagged_auto = {pol: np.mean([autos[bl] for bl in autos if bl[2] == pol and overall_class[utils.split_bl(bl)[0]] != 'bad'], axis=(0, 1)) for pol in ['ee', 'nn']}

Figure out and summarize per-antenna issues¶

In [10]:
def print_issue_summary(bad_ant_strs, title, notes='', plot=False):
    '''Print report for list of bad antenna polarizations strings'''
    unique_bad_antnums = [int(ap[:-1]) for ap in bad_ant_strs]
    display(HTML(f'<h2>{title}: ({len(bad_ant_strs)} antpols across {len(set([ba[:-1] for ba in bad_ant_strs]))} antennas)</h2>'))
    if len(notes) > 0:
        display(HTML(f'<h4>{notes}</h4>'))
    if len(bad_ant_strs) > 0:
        print(f'All Bad Antpols: {", ".join(bad_ant_strs)}\n')
    for node in nodes:
        if np.any([node == node_dict[a] for a in unique_bad_antnums]):
            aps = [ap for ap in bad_ant_strs if node_dict[int(ap[:-1])] == node]
            whole_ants = [str(wa) for wa in set([int(ap[:-1]) for ap in aps if ap.translate(translator) in bad_ant_strs])]
            single_pols =  [ap for ap in aps if ap.translate(translator) not in bad_ant_strs]
            print(f'Node {node}:')
            print(f'\tAntpols ({len(aps)} total): {", ".join(aps)}')
            print(f'\tWhole Ants ({len(whole_ants)} total): {", ".join(whole_ants)}')
            print(f'\tSingle Pols ({len(single_pols)} total): {", ".join(single_pols)}')
            if plot and SUM_FILE is not None:
                fig, axes = plt.subplots(1, 2, figsize=(12,4), dpi=70, sharey=True, gridspec_kw={'wspace': 0})
                for ax, pol in zip(axes, ['ee', 'nn']):                    
                    ax.semilogy(autos.freqs / 1e6, avg_unflagged_auto[pol], 'k--', label='Average\nUnflagged\nAuto')
                    for ap in aps:
                        ant = int(ap[:-1]), utils.comply_pol(ap[-1])
                        auto_bl = utils.join_bl(ant, ant)
                        if auto_bl[2] == pol:
                            ax.semilogy(autos.freqs / 1e6, np.mean(autos[auto_bl], axis=0), label=ap)
                    ax.legend()
                    ax.set_xlim([40, 299])
                    ax.set_title(f'{title} on Node {node} ({pol}-antennas)')
                    ax.set_xlabel('Frequency (MHz)')
                axes[0].set_ylabel('Single File Raw Autocorrelation')
                plt.tight_layout()
                plt.show()
In [11]:
# precompute various helpful quantities
all_slopes = np.vstack([t['Autocorr Slope'] for t in tables])
median_slope = np.median(all_slopes)
bad_slopes = np.vstack([t['Autocorr Slope Class'] for t in tables]) == 'bad'
suspect_slopes = np.vstack([t['Autocorr Slope Class'] for t in tables]) == 'suspect'
bad_shapes = np.vstack([t['Autocorr Shape Class'] for t in tables]) == 'bad'
suspect_shapes = np.vstack([t['Autocorr Shape Class'] for t in tables]) == 'suspect'
all_powers = np.vstack([t['Autocorr Power'] for t in tables])
median_power = np.median(all_powers)
bad_powers = np.vstack([t['Autocorr Power Class'] for t in tables]) == 'bad'
suspect_powers = np.vstack([t['Autocorr Power Class'] for t in tables]) == 'suspect'
bad_rfi = np.vstack([t['RFI in Autos Class'] for t in tables]) == 'bad'
suspect_rfi = np.vstack([t['RFI in Autos Class'] for t in tables]) == 'suspect'
In [12]:
# find all zeros
all_zeros_strs = ap_strs[np.mean(np.vstack([t['Dead? Class'] for t in tables]) == 'bad', axis=0) > all_zero_thresh]
In [13]:
# find even/odd zeros
eo_zeros_strs = ap_strs[np.mean(np.vstack([t['Even/Odd Zeros Class'] for t in tables]) == 'bad', axis=0) > eo_zeros_thresh]
eo_zeros_strs = [ap for ap in eo_zeros_strs if ap not in all_zeros_strs]
In [14]:
# find cross-polarized antennas
cross_pol_strs = ap_strs[np.mean(np.vstack([t['Cross-Polarized Class'] for t in tables]) == 'bad', axis=0) > cross_pol_thresh]
In [15]:
# find FEM power issues: must be low power, high slope, and bad or suspect in power, slope, rfi, and shape
fem_off_prod = (bad_powers + .5 * suspect_powers) * (bad_slopes + .5 * suspect_slopes)
fem_off_prod *= (bad_rfi + .5 * suspect_rfi) * (bad_shapes + .5 * suspect_shapes)
fem_off_strs = ap_strs[np.mean(fem_off_prod * (all_powers < median_power) * (all_slopes > median_slope), axis=0) > .1]
In [16]:
# find high power issues
high_power_strs = ap_strs[np.mean(bad_powers & (all_powers > median_power), axis=0) > high_power_thresh]
In [17]:
# find other low power issues
low_power_strs = ap_strs[np.mean(bad_powers & (all_powers < median_power), axis=0) > low_power_thresh]
low_power_strs = [ap for ap in low_power_strs if ap not in all_zeros_strs and ap not in fem_off_strs]
In [18]:
# find low correlation (but not low power)
low_corr_strs = ap_strs[np.mean(np.vstack([t['Low Correlation Class'] for t in tables]) == 'bad', axis=0) > low_corr_thresh]
low_corr_strs = [ap for ap in low_corr_strs if ap not in (set(low_power_strs) | set(all_zeros_strs) | set(fem_off_strs))]
In [19]:
# find bad bandpasses
bad_bandpass_strs = ap_strs[np.mean(bad_shapes, axis=0) > bad_shape_thresh]
bad_bandpass_strs = [ap for ap in bad_bandpass_strs if ap not in (set(low_power_strs) | set(all_zeros_strs) | set(high_power_strs) | set(fem_off_strs))]
In [20]:
# find antennas with excess RFI
excess_rfi_strs = ap_strs[np.mean(np.vstack([t['RFI in Autos Class'] for t in tables]) == 'bad', axis=0) > excess_rfi_thresh]
excess_rfi_strs = [ap for ap in excess_rfi_strs if ap not in (set(low_power_strs) | set(all_zeros_strs) |  set(fem_off_strs) |
                                                              set(bad_bandpass_strs) | set(high_power_strs))]
In [21]:
# find antennas with high redcal chi^2
chisq_strs = ap_strs[np.mean(np.vstack([t['Redcal chi^2 Class'] for t in tables]) == 'bad', axis=0) > chisq_thresh]
chisq_strs = [ap for ap in chisq_strs if ap not in (set(bad_bandpass_strs) | set(low_power_strs) | set(excess_rfi_strs) | set(low_corr_strs) |
                                                    set(all_zeros_strs) | set(high_power_strs) | set(fem_off_strs) | set(eo_zeros_strs))]
if OC_SKIP_OUTRIGGERS:
    chisq_strs = [ap for ap in chisq_strs if int(ap[:-1]) < 320]
In [22]:
# collect all results
to_print = [(all_zeros_strs, 'All-Zeros', 'These antennas have visibilities that are more than half zeros.'),
            (eo_zeros_strs, 'Excess Zeros in Either Even or Odd Spectra', 
             'These antennas are showing evidence of packet loss or X-engine failure.', True),
            (cross_pol_strs, 'Cross-Polarized', 'These antennas have their east and north cables swapped.'),
            (fem_off_strs, 'Likely FEM Power Issue', 'These antennas have low power, anomolously high slopes, and extra channels identified as RFI.', True),
            (high_power_strs, 'High Power', 'These antennas have high median power.', True),
            (low_power_strs, 'Other Low Power Issues', 'These antennas have low power, but are not all-zeros and not FEM off.', True),
            (low_corr_strs, 'Low Correlation, But Not Low Power', 'These antennas are low correlation, but their autocorrelation power levels look OK.'),
            (bad_bandpass_strs, 'Bad Bandpass Shapes, But Not Bad Power', 
             'These antennas have unusual bandpass shapes, but are not all-zeros, high power, low power, or FEM off.', True),
            (excess_rfi_strs, 'Excess RFI', 'These antennas have excess strucutre (identified as possible RFI) in their bandpassed relative to the ' + \
             'median antenna, but not low or high power or a bad bandpass.', True),
            (chisq_strs, 'Redcal chi^2', 'These antennas have been idenfied as not redundantly calibrating well, even after passing the above checks.')]
In [23]:
def print_high_level_summary():
    for tp in sorted(to_print, key=lambda x: len(x[0]), reverse=True):
        print(f'{len(tp[0])} antpols (on {len(set([ap[:-1] for ap in tp[0]]))} antennas) frequently flagged for {tp[1]}.')
        
def print_all_issue_summaries():
    for tp in to_print:
        print_issue_summary(*tp)

Summary of Per-Antenna Issues¶

In [24]:
print_high_level_summary()

171 antpols (on 86 antennas) frequently flagged for All-Zeros.
72 antpols (on 50 antennas) frequently flagged for Excess RFI.
26 antpols (on 22 antennas) frequently flagged for Likely FEM Power Issue.
24 antpols (on 19 antennas) frequently flagged for Low Correlation, But Not Low Power.
17 antpols (on 14 antennas) frequently flagged for High Power.
14 antpols (on 12 antennas) frequently flagged for Bad Bandpass Shapes, But Not Bad Power.
7 antpols (on 7 antennas) frequently flagged for Other Low Power Issues.
1 antpols (on 1 antennas) frequently flagged for Redcal chi^2.
0 antpols (on 0 antennas) frequently flagged for Excess Zeros in Either Even or Odd Spectra.
0 antpols (on 0 antennas) frequently flagged for Cross-Polarized.
In [25]:
print_all_issue_summaries()

All-Zeros: (171 antpols across 86 antennas)

These antennas have visibilities that are more than half zeros.

All Bad Antpols: 10e, 10n, 18e, 18n, 19e, 19n, 20e, 20n, 27e, 27n, 28e, 28n, 43e, 43n, 44e, 44n, 45e, 45n, 46e, 46n, 47e, 47n, 55e, 55n, 58e, 58n, 59e, 59n, 60e, 60n, 61e, 61n, 63e, 63n, 64e, 64n, 70e, 70n, 71e, 71n, 73e, 73n, 74e, 74n, 77e, 77n, 78e, 78n, 80e, 80n, 84e, 88e, 88n, 89e, 89n, 90e, 90n, 92e, 92n, 93e, 93n, 94e, 94n, 96e, 96n, 100e, 100n, 106e, 106n, 107e, 107n, 114e, 114n, 119e, 119n, 124e, 124n, 125e, 125n, 126e, 126n, 135e, 135n, 136e, 136n, 138e, 138n, 139e, 139n, 147e, 147n, 148e, 148n, 149e, 149n, 155e, 155n, 156e, 156n, 157e, 157n, 158e, 158n, 159e, 159n, 183e, 183n, 200e, 200n, 201e, 201n, 202e, 202n, 203e, 203n, 205e, 205n, 206e, 206n, 207e, 207n, 208e, 208n, 209e, 209n, 210e, 210n, 211e, 211n, 219e, 219n, 220e, 220n, 221e, 221n, 222e, 222n, 223e, 223n, 224e, 224n, 225e, 225n, 226e, 226n, 227e, 227n, 228e, 228n, 229e, 229n, 240e, 240n, 241e, 241n, 242e, 242n, 243e, 243n, 244e, 244n, 245e, 245n, 246e, 246n, 261e, 261n, 262e, 262n, 325e, 325n

Node 1:
	Antpols (6 total): 18e, 18n, 27e, 27n, 28e, 28n
	Whole Ants (3 total): 18, 27, 28
	Single Pols (0 total): 
Node 2:
	Antpols (6 total): 10e, 10n, 19e, 19n, 20e, 20n
	Whole Ants (3 total): 10, 19, 20
	Single Pols (0 total): 
Node 4:
	Antpols (6 total): 55e, 55n, 70e, 70n, 71e, 71n
	Whole Ants (3 total): 71, 70, 55
	Single Pols (0 total): 
Node 5:
	Antpols (18 total): 43e, 43n, 44e, 44n, 45e, 45n, 46e, 46n, 58e, 58n, 59e, 59n, 60e, 60n, 73e, 73n, 74e, 74n
	Whole Ants (9 total): 73, 74, 43, 44, 45, 46, 58, 59, 60
	Single Pols (0 total): 
Node 6:
	Antpols (12 total): 47e, 47n, 61e, 61n, 63e, 63n, 64e, 64n, 77e, 77n, 78e, 78n
	Whole Ants (6 total): 64, 77, 78, 47, 61, 63
	Single Pols (0 total): 
Node 7:
	Antpols (6 total): 100e, 100n, 119e, 119n, 138e, 138n
	Whole Ants (3 total): 138, 100, 119
	Single Pols (0 total): 
Node 8:
	Antpols (1 total): 84e
	Whole Ants (0 total): 
	Single Pols (1 total): 84e
Node 9:
	Antpols (18 total): 88e, 88n, 89e, 89n, 90e, 90n, 106e, 106n, 107e, 107n, 124e, 124n, 125e, 125n, 126e, 126n, 325e, 325n
	Whole Ants (9 total): 325, 106, 107, 88, 89, 90, 124, 125, 126
	Single Pols (0 total): 
Node 10:
	Antpols (6 total): 92e, 92n, 93e, 93n, 94e, 94n
	Whole Ants (3 total): 92, 93, 94
	Single Pols (0 total): 
Node 11:
	Antpols (6 total): 80e, 80n, 96e, 96n, 114e, 114n
	Whole Ants (3 total): 80, 114, 96
	Single Pols (0 total): 
Node 12:
	Antpols (12 total): 135e, 135n, 136e, 136n, 155e, 155n, 156e, 156n, 157e, 157n, 158e, 158n
	Whole Ants (6 total): 135, 136, 155, 156, 157, 158
	Single Pols (0 total): 
Node 13:
	Antpols (6 total): 139e, 139n, 159e, 159n, 183e, 183n
	Whole Ants (3 total): 183, 139, 159
	Single Pols (0 total): 
Node 15:
	Antpols (6 total): 147e, 147n, 148e, 148n, 149e, 149n
	Whole Ants (3 total): 147, 148, 149
	Single Pols (0 total): 
Node 18:
	Antpols (16 total): 200e, 200n, 201e, 201n, 202e, 202n, 203e, 203n, 219e, 219n, 220e, 220n, 221e, 221n, 222e, 222n
	Whole Ants (8 total): 200, 201, 202, 203, 219, 220, 221, 222
	Single Pols (0 total): 
Node 19:
	Antpols (22 total): 205e, 205n, 206e, 206n, 207e, 207n, 223e, 223n, 224e, 224n, 225e, 225n, 226e, 226n, 240e, 240n, 241e, 241n, 242e, 242n, 243e, 243n
	Whole Ants (11 total): 224, 225, 226, 205, 206, 207, 240, 241, 242, 243, 223
	Single Pols (0 total): 
Node 20:
	Antpols (24 total): 208e, 208n, 209e, 209n, 210e, 210n, 211e, 211n, 227e, 227n, 228e, 228n, 229e, 229n, 244e, 244n, 245e, 245n, 246e, 246n, 261e, 261n, 262e, 262n
	Whole Ants (12 total): 227, 228, 229, 261, 262, 208, 209, 210, 211, 244, 245, 246
	Single Pols (0 total):

Excess Zeros in Either Even or Odd Spectra: (0 antpols across 0 antennas)

These antennas are showing evidence of packet loss or X-engine failure.

Cross-Polarized: (0 antpols across 0 antennas)

These antennas have their east and north cables swapped.

Likely FEM Power Issue: (26 antpols across 22 antennas)

These antennas have low power, anomolously high slopes, and extra channels identified as RFI.

All Bad Antpols: 42n, 51e, 54e, 54n, 56n, 68n, 109n, 110n, 111n, 117e, 117n, 128n, 142n, 143n, 144n, 145n, 163n, 164n, 170e, 180n, 184e, 184n, 185n, 186e, 186n, 187n

Node 3:
	Antpols (2 total): 51e, 68n
	Whole Ants (0 total): 
	Single Pols (2 total): 51e, 68n

Node 4:
	Antpols (4 total): 42n, 54e, 54n, 56n
	Whole Ants (1 total): 54
	Single Pols (2 total): 42n, 56n

Node 7:
	Antpols (2 total): 117e, 117n
	Whole Ants (1 total): 117
	Single Pols (0 total): 

Node 10:
	Antpols (4 total): 109n, 110n, 111n, 128n
	Whole Ants (0 total): 
	Single Pols (4 total): 109n, 110n, 111n, 128n

Node 13:
	Antpols (2 total): 142n, 180n
	Whole Ants (0 total): 
	Single Pols (2 total): 142n, 180n

Node 14:
	Antpols (11 total): 143n, 144n, 145n, 163n, 164n, 184e, 184n, 185n, 186e, 186n, 187n
	Whole Ants (2 total): 184, 186
	Single Pols (7 total): 143n, 144n, 145n, 163n, 164n, 185n, 187n

Node 15:
	Antpols (1 total): 170e
	Whole Ants (0 total): 
	Single Pols (1 total): 170e

High Power: (17 antpols across 14 antennas)

These antennas have high median power.

All Bad Antpols: 15e, 16e, 29e, 29n, 81n, 108e, 131e, 144e, 163e, 164e, 165e, 165n, 166e, 166n, 182n, 185e, 187e

Node 1:
	Antpols (4 total): 15e, 16e, 29e, 29n
	Whole Ants (1 total): 29
	Single Pols (2 total): 15e, 16e

Node 7:
	Antpols (1 total): 81n
	Whole Ants (0 total): 
	Single Pols (1 total): 81n

Node 9:
	Antpols (1 total): 108e
	Whole Ants (0 total): 
	Single Pols (1 total): 108e

Node 11:
	Antpols (1 total): 131e
	Whole Ants (0 total): 
	Single Pols (1 total): 131e

Node 13:
	Antpols (1 total): 182n
	Whole Ants (0 total): 
	Single Pols (1 total): 182n

Node 14:
	Antpols (9 total): 144e, 163e, 164e, 165e, 165n, 166e, 166n, 185e, 187e
	Whole Ants (2 total): 165, 166
	Single Pols (5 total): 144e, 163e, 164e, 185e, 187e

Other Low Power Issues: (7 antpols across 7 antennas)

These antennas have low power, but are not all-zeros and not FEM off.

All Bad Antpols: 42e, 72n, 84n, 109e, 128e, 143e, 145e

Node 4:
	Antpols (2 total): 42e, 72n
	Whole Ants (0 total): 
	Single Pols (2 total): 42e, 72n

Node 8:
	Antpols (1 total): 84n
	Whole Ants (0 total): 
	Single Pols (1 total): 84n

Node 10:
	Antpols (2 total): 109e, 128e
	Whole Ants (0 total): 
	Single Pols (2 total): 109e, 128e

Node 14:
	Antpols (2 total): 143e, 145e
	Whole Ants (0 total): 
	Single Pols (2 total): 143e, 145e

Low Correlation, But Not Low Power: (24 antpols across 19 antennas)

These antennas are low correlation, but their autocorrelation power levels look OK.

All Bad Antpols: 3e, 15e, 16e, 29e, 29n, 34e, 81n, 108e, 113e, 113n, 131n, 133e, 144e, 146e, 146n, 163e, 164e, 165e, 165n, 166e, 166n, 185e, 187e, 320n

Node 1:
	Antpols (5 total): 3e, 15e, 16e, 29e, 29n
	Whole Ants (1 total): 29
	Single Pols (3 total): 3e, 15e, 16e
Node 3:
	Antpols (1 total): 320n
	Whole Ants (0 total): 
	Single Pols (1 total): 320n
Node 6:
	Antpols (1 total): 34e
	Whole Ants (0 total): 
	Single Pols (1 total): 34e
Node 7:
	Antpols (1 total): 81n
	Whole Ants (0 total): 
	Single Pols (1 total): 81n
Node 9:
	Antpols (1 total): 108e
	Whole Ants (0 total): 
	Single Pols (1 total): 108e
Node 11:
	Antpols (4 total): 113e, 113n, 131n, 133e
	Whole Ants (1 total): 113
	Single Pols (2 total): 131n, 133e
Node 14:
	Antpols (11 total): 144e, 146e, 146n, 163e, 164e, 165e, 165n, 166e, 166n, 185e, 187e
	Whole Ants (3 total): 146, 165, 166
	Single Pols (5 total): 144e, 163e, 164e, 185e, 187e

Bad Bandpass Shapes, But Not Bad Power: (14 antpols across 12 antennas)

These antennas have unusual bandpass shapes, but are not all-zeros, high power, low power, or FEM off.

All Bad Antpols: 3e, 32n, 34e, 50n, 57e, 104n, 113e, 113n, 131n, 133e, 146e, 146n, 161n, 320n

Node 1:
	Antpols (1 total): 3e
	Whole Ants (0 total): 
	Single Pols (1 total): 3e

Node 2:
	Antpols (1 total): 32n
	Whole Ants (0 total): 
	Single Pols (1 total): 32n

Node 3:
	Antpols (2 total): 50n, 320n
	Whole Ants (0 total): 
	Single Pols (2 total): 50n, 320n

Node 4:
	Antpols (1 total): 57e
	Whole Ants (0 total): 
	Single Pols (1 total): 57e

Node 6:
	Antpols (1 total): 34e
	Whole Ants (0 total): 
	Single Pols (1 total): 34e

Node 8:
	Antpols (1 total): 104n
	Whole Ants (0 total): 
	Single Pols (1 total): 104n

Node 11:
	Antpols (4 total): 113e, 113n, 131n, 133e
	Whole Ants (1 total): 113
	Single Pols (2 total): 131n, 133e

Node 13:
	Antpols (1 total): 161n
	Whole Ants (0 total): 
	Single Pols (1 total): 161n

Node 14:
	Antpols (2 total): 146e, 146n
	Whole Ants (1 total): 146
	Single Pols (0 total):

Excess RFI: (72 antpols across 50 antennas)

These antennas have excess strucutre (identified as possible RFI) in their bandpassed relative to the median antenna, but not low or high power or a bad bandpass.

All Bad Antpols: 3n, 4e, 4n, 5e, 5n, 7e, 7n, 9e, 15n, 21n, 30e, 30n, 31e, 31n, 36e, 37n, 38e, 38n, 40n, 41e, 57n, 65e, 65n, 66e, 66n, 67e, 67n, 72e, 82e, 82n, 83n, 85e, 85n, 86e, 86n, 87e, 87n, 97e, 97n, 98e, 98n, 99e, 99n, 101n, 102n, 103e, 104e, 105n, 111e, 112n, 116n, 120e, 121n, 122e, 122n, 123e, 123n, 127n, 129e, 129n, 130n, 167n, 168n, 170n, 179e, 179n, 189e, 191e, 191n, 237e, 237n, 329e

Node 1:
	Antpols (8 total): 3n, 4e, 4n, 5e, 5n, 15n, 30e, 30n
	Whole Ants (3 total): 4, 5, 30
	Single Pols (2 total): 3n, 15n

Node 2:
	Antpols (6 total): 7e, 7n, 9e, 21n, 31e, 31n
	Whole Ants (2 total): 31, 7
	Single Pols (2 total): 9e, 21n

Node 3:
	Antpols (10 total): 36e, 37n, 38e, 38n, 65e, 65n, 66e, 66n, 67e, 67n
	Whole Ants (4 total): 65, 66, 67, 38
	Single Pols (2 total): 36e, 37n

Node 4:
	Antpols (4 total): 40n, 41e, 57n, 72e
	Whole Ants (0 total): 
	Single Pols (4 total): 40n, 41e, 57n, 72e

Node 7:
	Antpols (8 total): 82e, 82n, 83n, 98e, 98n, 99e, 99n, 116n
	Whole Ants (3 total): 82, 99, 98
	Single Pols (2 total): 83n, 116n

Node 8:
	Antpols (16 total): 85e, 85n, 86e, 86n, 87e, 87n, 101n, 102n, 103e, 104e, 120e, 121n, 122e, 122n, 123e, 123n
	Whole Ants (5 total): 85, 86, 87, 122, 123
	Single Pols (6 total): 101n, 102n, 103e, 104e, 120e, 121n

Node 9:
	Antpols (1 total): 105n
	Whole Ants (0 total): 
	Single Pols (1 total): 105n

Node 10:
	Antpols (6 total): 111e, 112n, 127n, 129e, 129n, 130n
	Whole Ants (1 total): 129
	Single Pols (4 total): 111e, 112n, 127n, 130n

Node 11:
	Antpols (2 total): 97e, 97n
	Whole Ants (1 total): 97
	Single Pols (0 total): 

Node 12:
	Antpols (3 total): 179e, 179n, 329e
	Whole Ants (1 total): 179
	Single Pols (1 total): 329e

Node 15:
	Antpols (6 total): 167n, 168n, 170n, 189e, 191e, 191n
	Whole Ants (1 total): 191
	Single Pols (4 total): 167n, 168n, 170n, 189e

Node 18:
	Antpols (2 total): 237e, 237n
	Whole Ants (1 total): 237
	Single Pols (0 total):

Redcal chi^2: (1 antpols across 1 antennas)

These antennas have been idenfied as not redundantly calibrating well, even after passing the above checks.

All Bad Antpols: 108n

Node 9:
	Antpols (1 total): 108n
	Whole Ants (0 total): 
	Single Pols (1 total): 108n

Full-Day Visualizations¶

In [26]:
def classification_plot(col):
    class_array = classification_array(col)
    plt.figure(figsize=(12, len(ants) / 10), dpi=100)
    plt.imshow(class_array.T, aspect='auto', interpolation='none', cmap='RdYlGn', vmin=0, vmax=2,
               extent=[jds[0] - np.floor(jds[0]), jds[-1] - np.floor(jds[0]), len(ants), 0])
    plt.xlabel(f'JD - {int(jds[0])}')
    plt.yticks(ticks=np.arange(.5, len(ants)+.5), labels=[ant for ant in ants], fontsize=6)
    plt.ylabel('Antenna Number (East First, Then North)')
    plt.gca().tick_params(right=True, top=True, labelright=True, labeltop=True)
    plt.tight_layout()
    plt.title(f'{col}: Green is "good", Yellow is "suspect", Red is "bad"')

Figure 1: Per-File Overall Antenna Classification Summary¶

This "big green board" shows the overall (i.e. after redundant calibration) classification of antennas on a per-file basis. This is useful for looking at time-dependent effects across the array. While only antenna numbers are labeled, both polarizations are shown, first East then North going down, above and below the antenna's tick mark.

In [27]:
classification_plot('Antenna Class')
In [28]:
# compute flag fractions for all classifiers and antennas
frac_flagged = []
for col in class_cols[1:]:
    class_array = np.vstack([t[col] for t in tables])
    class_array[class_array == 'good'] = False
    class_array[class_array == 'suspect'] = False
    class_array[class_array == 'bad'] = True
    frac_flagged.append(np.sum(class_array, axis=0))
In [29]:
def plot_flag_frac_all_classifiers():
    ticks = []
    for i, col in enumerate(list(class_cols[1:])):
        ticks.append(f'{col} ({np.nanmean(np.array(frac_flagged).astype(float)[i]) / len(csv_files):.2%})')
    plt.figure(figsize=(8, len(ants) / 10), dpi=100)
    plt.imshow(np.array(frac_flagged).astype(float).T, aspect='auto', interpolation='none', cmap='viridis')
    plt.xticks(ticks=np.arange(len(list(class_cols[1:]))), labels=ticks, rotation=-45, ha='left')
    plt.yticks(ticks=np.arange(.5, len(ap_strs)+.5, 2), labels=[ant for ant in ants], fontsize=6)
    plt.ylabel('Antenna Number (East First, Then North)')
    plt.gca().tick_params(right=True, labelright=True,)
    ax2 = plt.gca().twiny()
    ax2.set_xticks(ticks=np.arange(len(list(class_cols[1:]))), labels=ticks, rotation=45, ha='left')
    plt.colorbar(ax=plt.gca(), label=f'Number of Files Flagged Out of {len(csv_files)}', aspect=50)
    plt.tight_layout()

Figure 2: Per-Classifier Antenna Flagging Summary¶

This plot shows the fraction of files flagged for each reason for each antenna. It's useful for seeing which problems are transitory and which ones are more common. Note that not all flags are independent and in particular redcal chi^2 takes an OR of other classifications as an input. Also note that only antenna numbers are labeled, both polarizations are shown, first East then North going down, above and below the antenna's tick mark.

In [30]:
plot_flag_frac_all_classifiers()
In [31]:
def array_class_plot():
    fig, axes = plt.subplots(1, 2, figsize=(14, 6), dpi=100, gridspec_kw={'width_ratios': [2, 1]})
    plot_antclass(hd.antpos, overall_class, ax=axes[0], ants=[ant for ant in hd.data_ants if ant < 320], legend=False, 
                  title=f'HERA Core: Overall Flagging Based on {overall_thresh:.1%} Daily Threshold')
    plot_antclass(hd.antpos, overall_class, ax=axes[1], ants=[ant for ant in hd.data_ants if ant >= 320], radius=50, title='Outriggers')

Figure 3: Array Visualization of Overall Daily Classification¶

Overall classification of antenna-polarizations shown on the array layout. If any antenna is marked bad for any reason more than the threshold (default 10%), it is marked bad here. Likewise, if any antenna is marked suspect for more than 10% of the night (but not bad), it's suspect here.

In [32]:
if SUM_FILE is not None: array_class_plot()