Second Round of Full Day RFI Flagging¶
by Josh Dillon, last updated July 31, 2023
This notebook is synthesizes information from individual delay_filtered_average_zscore notebooks to find low-level RFI and flag it. That notebook takes smooth_cal
ibrated data, redundantly averages it, performs a high-pass delay filter, and then incoherently averages across baselines, creating a per-polarization z-score. This notebook then takes that whole night of z-scores and finds a new set of flags to both add to the smooth_cal
files, which are updated in place, and to write down as new UVFlag
waterfall-type .h5
files.
Here's a set of links to skip to particular figures and tables:
• Figure 1: Waterfall of Maximum z-Score of Either Polarization Before Round 2 Flagging¶
• Figure 2: Histogram of z-scores¶
• Figure 3: Waterfall of Maximum z-Score of Either Polarization After Round 2 Flagging¶
• Figure 4: Spectra of Time-Averaged z-Scores¶
• Figure 5: Summary of Flags Before and After Round 2 Flagging¶
import time
tstart = time.time()
import os
os.environ['HDF5_USE_FILE_LOCKING'] = 'FALSE'
import h5py
import hdf5plugin # REQUIRED to have the compression plugins available
import numpy as np
import glob
import matplotlib.pyplot as plt
import matplotlib
import copy
import warnings
from pyuvdata import UVFlag, UVCal
from hera_cal import utils
from hera_qm import xrfi
from hera_qm.time_series_metrics import true_stretches
from IPython.display import display, HTML
%matplotlib inline
display(HTML("<style>.container { width:100% !important; }</style>"))
_ = np.seterr(all='ignore') # get rid of red warnings
%config InlineBackend.figure_format = 'retina'
# get input data file names
SUM_FILE = os.environ.get("SUM_FILE", None)
# SUM_FILE = '/lustre/aoc/projects/hera/h6c-analysis/IDR2/2459861/zen.2459861.25297.sum.uvh5'
SUM_SUFFIX = os.environ.get("SUM_SUFFIX", 'sum.uvh5')
# get input and output suffixes
SMOOTH_CAL_SUFFIX = os.environ.get("SMOOTH_CAL_SUFFIX", 'sum.smooth.calfits')
ZSCORE_SUFFIX = os.environ.get("ZSCORE_SUFFIX", 'sum.red_avg_zscore.h5')
FLAG_WATERFALL2_SUFFIX = os.environ.get("FLAG_WATERFALL2_SUFFIX", 'sum.flag_waterfall_round_2.h5')
OUT_YAML_SUFFIX = os.environ.get("OUT_YAML_SUFFIX", '_aposteriori_flags.yaml')
OUT_YAML_DIR = os.environ.get("OUT_YAML_DIR", None)
# build globs
sum_glob = '.'.join(SUM_FILE.split('.')[:-3]) + '.*.' + SUM_SUFFIX
cal_files_glob = sum_glob.replace(SUM_SUFFIX, SMOOTH_CAL_SUFFIX)
zscore_glob = sum_glob.replace(SUM_SUFFIX, ZSCORE_SUFFIX)
# build out yaml file
if OUT_YAML_DIR is None:
OUT_YAML_DIR = os.path.dirname(SUM_FILE)
out_yaml_file = os.path.join(OUT_YAML_DIR, SUM_FILE.split('.')[-4] + OUT_YAML_SUFFIX)
# get flagging parameters
Z_THRESH = float(os.environ.get("Z_THRESH", 5))
WS_Z_THRESH = float(os.environ.get("WS_Z_THRESH", 4))
AVG_Z_THRESH = float(os.environ.get("AVG_Z_THRESH", 1))
MAX_FREQ_FLAG_FRAC = float(os.environ.get("MAX_FREQ_FLAG_FRAC", .25))
MAX_TIME_FLAG_FRAC = float(os.environ.get("MAX_TIME_FLAG_FRAC", .1))
for setting in ['Z_THRESH', 'WS_Z_THRESH', 'AVG_Z_THRESH', 'MAX_FREQ_FLAG_FRAC', 'MAX_TIME_FLAG_FRAC']:
print(f'{setting} = {eval(setting)}')
Z_THRESH = 5.0 WS_Z_THRESH = 4.0 AVG_Z_THRESH = 1.0 MAX_FREQ_FLAG_FRAC = 0.25 MAX_TIME_FLAG_FRAC = 0.1
Load z-scores¶
# load z-scores
zscore_files = sorted(glob.glob(zscore_glob))
print(f'Found {len(zscore_files)} *.{ZSCORE_SUFFIX} files starting with {zscore_files[0]}.')
uvf = UVFlag(zscore_files, use_future_array_shapes=True)
Found 1851 *.sum.red_avg_zscore.h5 files starting with /mnt/sn1/data1/2460601/zen.2460601.25240.sum.red_avg_zscore.h5.
# get calibration solution files
cal_files = sorted(glob.glob(cal_files_glob))
print(f'Found {len(cal_files)} *.{SMOOTH_CAL_SUFFIX} files starting with {cal_files[0]}.')
Found 1851 *.sum.smooth.calfits files starting with /mnt/sn1/data1/2460601/zen.2460601.25240.sum.smooth.calfits.
assert len(zscore_files) == len(cal_files)
# extract z-scores and correct by a single number per polarization to account for biases created by filtering
zscore = {pol: uvf.metric_array[:, :, np.argwhere(uvf.polarization_array == utils.polstr2num(pol, x_orientation=uvf.x_orientation))[0][0]] for pol in ['ee', 'nn']}
zscore = {pol: zscore[pol] - np.nanmedian(zscore[pol]) for pol in zscore}
freqs = uvf.freq_array
times = uvf.time_array
extent = [freqs[0] / 1e6, freqs[-1] / 1e6, times[-1] - int(times[0]), times[0] - int(times[0])]
def plot_max_z_score(zscore, flags=None):
if flags is None:
flags = np.any(~np.isfinite(list(zscore.values())), axis=0)
plt.figure(figsize=(14,10), dpi=100)
plt.imshow(np.where(flags, np.nan, np.nanmax([zscore['ee'], zscore['nn']], axis=0)), aspect='auto',
cmap='coolwarm', interpolation='none', vmin=-10, vmax=10, extent=extent)
plt.colorbar(location='top', label='Max z-score of either polarization', extend='both', aspect=40, pad=.02)
plt.xlabel('Frequency (MHz)')
plt.ylabel(f'JD - {int(times[0])}')
plt.tight_layout()
Figure 1: Waterfall of Maximum z-Score of Either Polarization Before Round 2 Flagging¶
Shows the worse of the two results from delay_filtered_average_zscore from either polarization. Dips near flagged channels are expected, due to overfitting of noise. Positive-going excursions are problematic and likely evidence of RFI.
plot_max_z_score(zscore)
All-NaN axis encountered
def plot_histogram():
plt.figure(figsize=(14,4), dpi=100)
bins = np.arange(-50, 100, .1)
hist_ee = plt.hist(np.ravel(zscore['ee']), bins=bins, density=True, label='ee-polarized z-scores', alpha=.5)
hist_nn = plt.hist(np.ravel(zscore['nn']), bins=bins, density=True, label='nn-polarized z-scores', alpha=.5)
plt.plot(bins, (2*np.pi)**-.5 * np.exp(-bins**2 / 2), 'k:', label='Gaussian approximate\nnoise-only distribution')
plt.axvline(WS_Z_THRESH, c='r', ls='--', label='Watershed z-score')
plt.axvline(Z_THRESH, c='r', ls='-', label='Threshold z-score')
plt.yscale('log')
all_densities = np.concatenate([hist_ee[0][hist_ee[0] > 0], hist_nn[0][hist_nn[0] > 0]])
plt.ylim(np.min(all_densities) / 2, np.max(all_densities) * 2)
plt.xlim([-50, 100])
plt.legend()
plt.xlabel('z-score')
plt.ylabel('Density')
plt.tight_layout()
Figure 2: Histogram of z-scores¶
Shows a comparison of the histogram of z-scores in this file (one per polarization) to a Gaussian approximation of what one might expect from thermal noise. Without filtering, the actual distribution is a weighted sum of Rayleigh distributions. Filtering further complicates this. To make the z-scores more reliable, a single per-polarization median is subtracted from each waterfall, which allows us to flag low-level outliers with more confidence. Any points beyond the solid red line are flagged. Any points neighboring a flag beyond the dashed red line are also flagged. Finally, flagging is performed for low-level outliers in whole times or channels.
plot_histogram()
Perform flagging¶
def iteratively_flag_on_averaged_zscore(flags, zscore, avg_z_thresh=1.5, verbose=True):
'''Flag whole integrations or channels based on average z-score. This is done
iteratively to prevent bad times affecting channel averages or vice versa.'''
flagged_chan_count = 0
flagged_int_count = 0
while True:
zspec = np.nanmean(np.where(flags, np.nan, zscore), axis=0)
ztseries = np.nanmean(np.where(flags, np.nan, zscore), axis=1)
if (np.nanmax(zspec) < avg_z_thresh) and (np.nanmax(ztseries) < avg_z_thresh):
break
if np.nanmax(zspec) >= np.nanmax(ztseries):
flagged_chan_count += np.sum((zspec >= np.nanmax(ztseries)) & (zspec >= avg_z_thresh))
flags[:, (zspec >= np.nanmax(ztseries)) & (zspec >= avg_z_thresh)] = True
else:
flagged_int_count += np.sum((ztseries >= np.nanmax(zspec)) & (ztseries >= avg_z_thresh))
flags[(ztseries >= np.nanmax(zspec)) & (ztseries >= avg_z_thresh), :] = True
if verbose:
print(f'\tFlagging an additional {flagged_int_count} integrations and {flagged_chan_count} channels.')
def impose_max_chan_flag_frac(flags, max_flag_frac=.25, verbose=True):
'''Flag channels already flagged more than max_flag_frac (excluding completely flagged times).'''
unflagged_times = ~np.all(flags, axis=1)
frequently_flagged_chans = np.mean(flags[unflagged_times, :], axis=0) >= max_flag_frac
if verbose:
print(f'\tFlagging {np.sum(frequently_flagged_chans) - np.sum(np.all(flags, axis=0))} channels previously flagged {max_flag_frac:.2%} or more.')
flags[:, frequently_flagged_chans] = True
def impose_max_time_flag_frac(flags, max_flag_frac=.25, verbose=True):
'''Flag times already flagged more than max_flag_frac (excluding completely flagged channels).'''
unflagged_chans = ~np.all(flags, axis=0)
frequently_flagged_times = np.mean(flags[:, unflagged_chans], axis=1) >= max_flag_frac
if verbose:
print(f'\tFlagging {np.sum(frequently_flagged_times) - np.sum(np.all(flags, axis=1))} times previously flagged {max_flag_frac:.2%} or more.')
flags[frequently_flagged_times, :] = True
flags = np.any(~np.isfinite(list(zscore.values())), axis=0)
print(f'{np.mean(flags):.3%} of waterfall flagged to start.')
# flag largest outliers
for pol in ['ee', 'nn']:
flags |= (zscore[pol] > Z_THRESH)
print(f'{np.mean(flags):.3%} of waterfall flagged after flagging z > {Z_THRESH} outliers.')
# watershed flagging
while True:
nflags = np.sum(flags)
for pol in ['ee', 'nn']:
flags |= xrfi._ws_flag_waterfall(zscore[pol], flags, WS_Z_THRESH)
if np.sum(flags) == nflags:
break
print(f'{np.mean(flags):.3%} of waterfall flagged after watershed flagging on z > {WS_Z_THRESH} neightbors of prior flags.')
# flag whole integrations or channels
while True:
nflags = np.sum(flags)
for pol in ['ee', 'nn']:
iteratively_flag_on_averaged_zscore(flags, zscore[pol], avg_z_thresh=AVG_Z_THRESH, verbose=True)
impose_max_chan_flag_frac(flags, max_flag_frac=MAX_FREQ_FLAG_FRAC, verbose=True)
impose_max_time_flag_frac(flags, max_flag_frac=MAX_TIME_FLAG_FRAC, verbose=True)
if np.sum(flags) == nflags:
break
print(f'{np.mean(flags):.3%} of waterfall flagged after flagging whole times and channels with average z > {AVG_Z_THRESH}.')
24.249% of waterfall flagged to start. 26.628% of waterfall flagged after flagging z > 5.0 outliers.
27.195% of waterfall flagged after watershed flagging on z > 4.0 neightbors of prior flags.
Mean of empty slice Mean of empty slice
Flagging an additional 0 integrations and 4 channels. Flagging 37 channels previously flagged 25.00% or more. Flagging 318 times previously flagged 10.00% or more.
Flagging an additional 0 integrations and 2 channels. Flagging 4 channels previously flagged 25.00% or more. Flagging 0 times previously flagged 10.00% or more. Flagging an additional 0 integrations and 0 channels. Flagging 0 channels previously flagged 25.00% or more.
Flagging 0 times previously flagged 10.00% or more. Flagging an additional 0 integrations and 0 channels. Flagging 0 channels previously flagged 25.00% or more. Flagging 0 times previously flagged 10.00% or more. 35.023% of waterfall flagged after flagging whole times and channels with average z > 1.0.
Show results of flagging¶
Figure 3: Waterfall of Maximum z-Score of Either Polarization After Round 2 Flagging¶
The same as Figure 1, but after the flagging performed in this notebook.
plot_max_z_score(zscore, flags=flags)
All-NaN axis encountered
def zscore_spectra():
fig, axes = plt.subplots(2, 1, figsize=(14,6), dpi=100, sharex=True, sharey=True, gridspec_kw={'hspace': 0})
for ax, pol in zip(axes, ['ee', 'nn']):
ax.plot(freqs / 1e6, np.nanmean(zscore[pol], axis=0),'r', label=f'{pol}-Polarization Before Round 2 Flagging', lw=.5)
ax.plot(freqs / 1e6, np.nanmean(np.where(flags, np.nan, zscore[pol]), axis=0), label=f'{pol}-Polarization After Round 2 Flagging')
ax.legend(loc='lower right')
ax.set_ylabel('Time-Averged Z-Score\n(Excluding Flags)')
ax.set_ylim(-11, 11)
axes[1].set_xlabel('Frequency (MHz)')
plt.tight_layout()
Figure 4: Spectra of Time-Averaged z-Scores¶
The average along the time axis of Figures 1 and 3 (though now separated per-polarization). This plot is useful for showing channels with repeated low-level RFI.
zscore_spectra()
Mean of empty slice Mean of empty slice
def summarize_flagging():
plt.figure(figsize=(14,10), dpi=100)
cmap = matplotlib.colors.ListedColormap(((0, 0, 0),) + matplotlib.cm.get_cmap("Set2").colors[0:2])
plt.imshow(np.where(np.any(~np.isfinite(list(zscore.values())), axis=0), 1, np.where(flags, 2, 0)),
aspect='auto', cmap=cmap, interpolation='none', extent=extent)
plt.clim([-.5, 2.5])
cbar = plt.colorbar(location='top', aspect=40, pad=.02)
cbar.set_ticks([0, 1, 2])
cbar.set_ticklabels(['Unflagged', 'Previously Flagged', 'Flagged Here Using Delayed Filtered z-Scores'])
plt.xlabel('Frequency (MHz)')
plt.ylabel(f'JD - {int(times[0])}')
plt.tight_layout()
Figure 5: Summary of Flags Before and After Round 2 Flagging¶
This plot shows which times and frequencies were flagged before and after this notebook. It is directly comparable to Figure 5 of the first round full_day_rfi notebook.
summarize_flagging()
The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
Save results¶
add_to_history = 'by full_day_rfi_round_2 notebook with the following environment:\n' + '=' * 65 + '\n' + os.popen('conda env export').read() + '=' * 65
tind = 0
always_flagged_ants = set()
ever_unflagged_ants = set()
for cal_file in cal_files:
with warnings.catch_warnings():
warnings.simplefilter("ignore")
# update cal_file
uvc = UVCal()
uvc.read(cal_file, use_future_array_shapes=True)
uvc.flag_array |= (flags[tind:tind + len(uvc.time_array), :].T)[None, :, :, None]
uvc.history += 'Modified ' + add_to_history
uvc.write_calfits(cal_file, clobber=True)
# keep track of flagged antennas
for antnum in uvc.ant_array:
for antpol in ['Jee', 'Jnn']:
if np.all(uvc.get_flags(antnum, antpol)):
if (antnum, antpol) not in ever_unflagged_ants:
always_flagged_ants.add((antnum, antpol))
else:
ever_unflagged_ants.add((antnum, antpol))
always_flagged_ants.discard((antnum, antpol))
# Create new flag object
uvf_out = UVFlag(uvc, waterfall=True, mode='flag')
uvf_out.flag_array |= flags[tind:tind + len(uvc.time_array), :, None]
uvf_out.history += 'Produced ' + add_to_history
uvf_out.write(cal_file.replace(SMOOTH_CAL_SUFFIX, FLAG_WATERFALL2_SUFFIX), clobber=True)
# increment time index
tind += len(uvc.time_array)
print(f'Saved {len(cal_files)} *.{FLAG_WATERFALL2_SUFFIX} files starting with {cal_files[0].replace(SMOOTH_CAL_SUFFIX, FLAG_WATERFALL2_SUFFIX)}.')
File /mnt/sn1/data1/2460601/zen.2460601.25240.sum.flag_waterfall_round_2.h5 exists; clobbering
File /mnt/sn1/data1/2460601/zen.2460601.25262.sum.flag_waterfall_round_2.h5 exists; clobbering
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# write summary of entirely flagged times/freqs/ants to yaml
all_flagged_times = np.all(flags, axis=1)
all_flagged_freqs = np.all(flags, axis=0)
all_flagged_ants = sorted(always_flagged_ants)
dt = np.median(np.diff(times))
out_yml_str = 'JD_flags: ' + str([[times[flag_stretch][0] - dt / 2, times[flag_stretch][-1] + dt / 2]
for flag_stretch in true_stretches(all_flagged_times)])
df = np.median(np.diff(freqs))
out_yml_str += '\n\nfreq_flags: ' + str([[freqs[flag_stretch][0] - df / 2, freqs[flag_stretch][-1] + df / 2]
for flag_stretch in true_stretches(all_flagged_freqs)])
out_yml_str += '\n\nex_ants: ' + str(all_flagged_ants).replace("'", "").replace('(', '[').replace(')', ']')
print(f'Writing the following to {out_yaml_file}\n' + '-' * (25 + len(out_yaml_file)))
print(out_yml_str)
with open(out_yaml_file, 'w') as outfile:
outfile.writelines(out_yml_str)
Writing the following to /mnt/sn1/data1/2460601/2460601_aposteriori_flags.yaml ------------------------------------------------------------------------------ JD_flags: [[2460601.2528482173, 2460601.2529600654], [2460601.253183761, 2460601.2532956093], [2460601.254749635, 2460601.254861483], [2460601.2554207235, 2460601.255868116], [2460601.256091812, 2460601.2562036603], [2460601.256762901, 2460601.256874749], [2460601.2574339896, 2460601.260118344], [2460601.260453888, 2460601.2607894326], [2460601.261013129, 2460601.261348673], [2460601.2624671543, 2460601.2626908505], [2460601.2648159643, 2460601.2650396605], [2460601.2651515086, 2460601.265375205], [2460601.2698491295, 2460601.2699609776], [2460601.2715268508, 2460601.271862395], [2460601.274658598, 2460601.274770446], [2460601.2751059905, 2460601.2752178386], [2460601.278908826, 2460601.279132522], [2460601.280027307, 2460601.280139155], [2460601.280810244, 2460601.280922092], [2460601.288639611, 2460601.288751459], [2460601.2907647253, 2460601.2909884215], [2460601.291547662, 2460601.292218751], [2460601.2944557127, 2460601.2951268014], [2460601.2953504976, 2460601.2954623457], [2460601.295574194, 2460601.2979230043], [2460601.298258548, 2460601.2983703963], [2460601.2988177887, 2460601.298929637], [2460601.299265181, 2460601.2994888774], [2460601.2997125736, 2460601.2998244218], [2460601.29993627, 2460601.3069827007], [2460601.307094549, 2460601.307206397], [2460601.3075419413, 2460601.3076537894], [2460601.3077656375, 2460601.3078774856], [2460601.3079893338, 2460601.308324878], [2460601.3088841187, 2460601.310673688], [2460601.310785536, 2460601.3108973843], [2460601.3112329287, 2460601.3155950047], [2460601.3162660934, 2460601.316713486], [2460601.316937182, 2460601.3172727264], [2460601.3173845746, 2460601.3182793595], [2460601.3185030557, 2460601.318614904], [2460601.318726752, 2460601.3193978406], [2460601.319621537, 2460601.319845233], [2460601.3200689293, 2460601.3202926256], [2460601.320516322, 2460601.320740018], [2460601.3208518657, 2460601.320963714], [2460601.32118741, 2460601.3214111063], [2460601.3218584987, 2460601.322082195], [2460601.3227532837, 2460601.32297698], [2460601.3236480686, 2460601.3237599167], [2460601.323871765, 2460601.323983613], [2460601.324207309, 2460601.3243191573], [2460601.3247665497, 2460601.324990246], [2460601.325102094, 2460601.325213942], [2460601.326332423, 2460601.326556119], [2460601.3267798154, 2460601.3271153597], [2460601.327227208, 2460601.327450904], [2460601.3276746003, 2460601.3280101446], [2460601.3281219928, 2460601.3308063475], [2460601.3309181957, 2460601.3314774362], [2460601.3315892844, 2460601.3329314613], [2460601.3331551575, 2460601.3349447274], [2460601.33539212, 2460601.335615816], [2460601.3358395123, 2460601.3368461453], [2460601.3369579935, 2460601.3370698416], [2460601.337405386, 2460601.338076474], [2460601.3384120185, 2460601.338971259], [2460601.3391949553, 2460601.3395304997], [2460601.339866044, 2460601.3404252846], [2460601.3405371327, 2460601.340648981], [2460601.3414319176, 2460601.3415437657], [2460601.3421030063, 2460601.3422148544], [2460601.342774095, 2460601.342885943], [2460601.3429977912, 2460601.3445636644], [2460601.3446755125, 2460601.3447873606], [2460601.3476954116, 2460601.347919108], [2460601.348142804, 2460601.348254652], [2460601.3483665003, 2460601.3484783485], [2460601.3518337915, 2460601.3519456396], [2460601.353287817, 2460601.3537352094], [2460601.355748475, 2460601.3559721713], [2460601.3560840194, 2460601.3561958675], [2460601.366038501, 2460601.366262197], [2460601.37554559, 2460601.3756574383], [2460601.3812498436, 2460601.3813616917], [2460601.3880725782, 2460601.3881844264], [2460601.3938886793, 2460601.3940005274], [2460601.3952308567, 2460601.395342705], [2460601.3986981483, 2460601.3988099964], [2460601.4044024018, 2460601.40451425], [2460601.409100022, 2460601.4092118703], [2460601.424646909, 2460601.424758757], [2460601.4262127825, 2460601.4264364787], [2460601.4315814916, 2460601.4316933397], [2460601.433482909, 2460601.4338184535], [2460601.4350487827, 2460601.435272479], [2460601.438292378, 2460601.438404226], [2460601.4385160743, 2460601.4389634663], [2460601.447687619, 2460601.447911315], [2460601.449700885, 2460601.449812733], [2460601.4542866573, 2460601.4545103535], [2460601.4631226575, 2460601.4632345056], [2460601.466589949, 2460601.466701797], [2460601.4684913666, 2460601.4686032147], [2460601.4713994176, 2460601.4715112657], [2460601.4882884817, 2460601.48840033], [2460601.49544676, 2460601.4955586083], [2460601.504170913, 2460601.504394609], [2460601.5057367864, 2460601.5058486345], [2460601.5059604826, 2460601.506743419], [2460601.5071908114, 2460601.507526356], [2460601.509539622, 2460601.50965147], [2460601.5118884323, 2460601.5120002804], [2460601.5133424574, 2460601.5134543055], [2460601.5164742046, 2460601.5165860527], [2460601.5179282296, 2460601.5180400778], [2460601.525533901, 2460601.525645749], [2460601.5279945596, 2460601.5281064077], [2460601.5322447876, 2460601.5323566357], [2460601.532468484, 2460601.532580332], [2460601.535823927, 2460601.535935775], [2460601.53683056, 2460601.536942408], [2460601.537054256, 2460601.537166104], [2460601.5460021044, 2460601.5462258006], [2460601.547679826, 2460601.5479035224], [2460601.550252333, 2460601.550364181], [2460601.5510352696, 2460601.5511471177], [2460601.551258966, 2460601.551370814], [2460601.5531603834, 2460601.5532722315], [2460601.5540551683, 2460601.5543907126], [2460601.5580817, 2460601.558193548], [2460601.5586409406, 2460601.558864637], [2460601.558976485, 2460601.559200181], [2460601.5596475736, 2460601.5597594217], [2460601.5624437765, 2460601.5625556246], [2460601.563226713, 2460601.563338561], [2460601.563450409, 2460601.563562257], [2460601.5640096497, 2460601.564121498], [2460601.5650162827, 2460601.565239979], [2460601.567253245, 2460601.5677006375], [2460601.56814803, 2460601.568371726], [2460601.5700494475, 2460601.5701612956], [2460601.570608688, 2460601.570720536], [2460601.5709442324, 2460601.5710560805], [2460601.571391625, 2460601.571503473], [2460601.5729574985, 2460601.5730693466], [2460601.573404891, 2460601.5738522834], [2460601.5744115235, 2460601.5746352198], [2460601.575641853, 2460601.575865549], [2460601.5795565364, 2460601.5796683845], [2460601.583023828, 2460601.583247524], [2460601.583806765, 2460601.583918613], [2460601.5868266635, 2460601.5869385116], [2460601.588504385, 2460601.5887280814], [2460601.5896228664, 2460601.5897347145], [2460601.5905176513, 2460601.5906294994], [2460601.590853195, 2460601.5910768914], [2460601.6002484364, 2460601.6004721327], [2460601.600807677, 2460601.6010313733], [2460601.6024853983, 2460601.6027090945], [2460601.6034920313, 2460601.6036038795], [2460601.606064538, 2460601.606176386], [2460601.6062882342, 2460601.6065119305], [2460601.6066237786, 2460601.606847475], [2460601.6083015, 2460601.6087488923], [2460601.6097555254, 2460601.6099792216], [2460601.6106503103, 2460601.6108740065], [2460601.6118806396, 2460601.612216184], [2460601.613110969, 2460601.613334665], [2460601.613893905, 2460601.6140057533], [2460601.615459779, 2460601.615683475], [2460601.6162427156, 2460601.61657826], [2460601.617361197, 2460601.617473045], [2460601.61836783, 2460601.618479678], [2460601.618591526, 2460601.6189270704], [2460601.6206047917, 2460601.62071664], [2460601.620940336, 2460601.6213877285], [2460601.6242957795, 2460601.6244076276], [2460601.6264208932, 2460601.6265327414], [2460601.628322311, 2460601.6284341593], [2460601.6293289443, 2460601.6294407924], [2460601.6295526405, 2460601.630223729], [2460601.630559273, 2460601.630671121], [2460601.6317896023, 2460601.6320132986], [2460601.6329080835, 2460601.6331317797], [2460601.6340265647, 2460601.6346976534], [2460601.6355924383, 2460601.6357042864], [2460601.636710919, 2460601.6370464633], [2460601.638612337, 2460601.638724185], [2460601.640737451, 2460601.6408492993], [2460601.6410729955, 2460601.6411848436], [2460601.6426388687, 2460601.642974413], [2460601.6433099573, 2460601.6434218055], [2460601.644875831, 2460601.644987679], [2460601.645770616, 2460601.645994312], [2460601.6478957296, 2460601.648119426], [2460601.648343122, 2460601.64845497], [2460601.6496852995, 2460601.6499089957], [2460601.650356388, 2460601.6504682363], [2460601.655613249, 2460601.6557250973], [2460601.6578502115, 2460601.6580739077], [2460601.661764895, 2460601.661876743], [2460601.6621004394, 2460601.6622122875], [2460601.6628833762, 2460601.6632189206], [2460601.663666313, 2460601.6663506674]] freq_flags: [[49911499.0234375, 50033569.3359375], [54672241.2109375, 54794311.5234375], [62362670.8984375, 62973022.4609375], [63095092.7734375, 63217163.0859375], [69931030.2734375, 70053100.5859375], [87387084.9609375, 108016967.7734375], [109970092.7734375, 110092163.0859375], [113265991.2109375, 113388061.5234375], [113632202.1484375, 113754272.4609375], [115585327.1484375, 116806030.2734375], [124496459.9609375, 125473022.4609375], [127548217.7734375, 127670288.0859375], [129989624.0234375, 130111694.3359375], [136215209.9609375, 136459350.5859375], [136947631.8359375, 138046264.6484375], [138290405.2734375, 138412475.5859375], [138656616.2109375, 138778686.5234375], [141464233.3984375, 141586303.7109375], [141708374.0234375, 141830444.3359375], [142074584.9609375, 142318725.5859375], [143051147.4609375, 143295288.0859375], [143539428.7109375, 143661499.0234375], [143783569.3359375, 144027709.9609375], [145736694.3359375, 145980834.9609375], [147079467.7734375, 147323608.3984375], [147445678.7109375, 147567749.0234375], [149154663.0859375, 149276733.3984375], [149887084.9609375, 150009155.2734375], [153671264.6484375, 153793334.9609375], [154159545.8984375, 154403686.5234375], [155014038.0859375, 155136108.3984375], [157577514.6484375, 157699584.9609375], [158187866.2109375, 158309936.5234375], [169906616.2109375, 170150756.8359375], [170883178.7109375, 171005249.0234375], [175155639.6484375, 175399780.2734375], [181137084.9609375, 181381225.5859375], [183212280.2734375, 183334350.5859375], [187362670.8984375, 187606811.5234375], [189926147.4609375, 190048217.7734375], [190658569.3359375, 191879272.4609375], [192001342.7734375, 192123413.0859375], [195419311.5234375, 195907592.7734375], [197128295.8984375, 197372436.5234375], [198104858.3984375, 198348999.0234375], [199203491.2109375, 199325561.5234375], [201766967.7734375, 201889038.0859375], [204940795.8984375, 205062866.2109375], [205184936.5234375, 205307006.8359375], [208480834.9609375, 208724975.5859375], [209945678.7109375, 210067749.0234375], [212142944.3359375, 212265014.6484375], [215194702.1484375, 215316772.4609375], [220687866.2109375, 220809936.5234375], [221176147.4609375, 221298217.7734375], [222640991.2109375, 223983764.6484375], [227401733.3984375, 227523803.7109375], [227645874.0234375, 227767944.3359375], [229110717.7734375, 229354858.3984375], [229965209.9609375, 230087280.2734375], [231063842.7734375, 231185913.0859375]] ex_ants: [[7, Jee], [8, Jee], [9, Jee], [15, Jnn], [18, Jee], [18, Jnn], [21, Jee], [22, Jee], [22, Jnn], [27, Jee], [27, Jnn], [28, Jee], [28, Jnn], [29, Jnn], [31, Jnn], [32, Jnn], [33, Jnn], [34, Jee], [34, Jnn], [35, Jee], [35, Jnn], [36, Jee], [36, Jnn], [37, Jnn], [40, Jnn], [42, Jnn], [45, Jee], [46, Jee], [47, Jee], [47, Jnn], [48, Jee], [48, Jnn], [49, Jee], [49, Jnn], [51, Jee], [54, Jnn], [57, Jee], [61, Jee], [61, Jnn], [62, Jee], [62, Jnn], [63, Jee], [63, Jnn], [64, Jee], [64, Jnn], [69, Jee], [72, Jnn], [73, Jee], [77, Jee], [77, Jnn], [78, Jee], [78, Jnn], [82, Jnn], [84, Jnn], [85, Jnn], [86, Jee], [86, Jnn], [87, Jee], [88, Jee], [88, Jnn], [90, Jee], [90, Jnn], [92, Jee], [93, Jee], [96, Jee], [97, Jnn], [98, Jnn], [100, Jee], [100, Jnn], [101, Jnn], [102, Jnn], [103, Jee], [104, Jnn], [107, Jee], [107, Jnn], [108, Jnn], [109, Jnn], [120, Jee], [120, Jnn], [121, Jee], [121, Jnn], [125, Jee], [125, Jnn], [127, Jee], [129, Jee], [129, Jnn], [130, Jee], [130, Jnn], [132, Jee], [134, Jee], [136, Jee], [136, Jnn], [137, Jee], [137, Jnn], [142, Jnn], [144, Jee], [144, Jnn], [148, Jee], [155, Jee], [161, Jnn], [170, Jee], [171, Jnn], [173, Jee], [173, Jnn], [176, Jee], [176, Jnn], [177, Jee], [177, Jnn], [178, Jee], [178, Jnn], [179, Jee], [179, Jnn], [180, Jee], [180, Jnn], [182, Jee], [184, Jee], [188, Jnn], [189, Jee], [189, Jnn], [191, Jee], [192, Jee], [192, Jnn], [193, Jee], [193, Jnn], [194, Jee], [199, Jnn], [200, Jee], [200, Jnn], [201, Jnn], [202, Jnn], [206, Jee], [208, Jee], [208, Jnn], [209, Jnn], [212, Jnn], [213, Jee], [213, Jnn], [215, Jee], [215, Jnn], [218, Jnn], [221, Jee], [232, Jee], [234, Jnn], [241, Jee], [241, Jnn], [242, Jee], [242, Jnn], [243, Jee], [243, Jnn], [245, Jnn], [246, Jee], [250, Jee], [251, Jee], [253, Jnn], [255, Jnn], [256, Jee], [256, Jnn], [262, Jee], [262, Jnn], [266, Jee], [266, Jnn], [268, Jnn], [270, Jee], [270, Jnn], [272, Jee], [281, Jee], [281, Jnn], [295, Jee], [295, Jnn], [320, Jee], [320, Jnn], [321, Jee], [321, Jnn], [323, Jee], [323, Jnn], [324, Jee], [324, Jnn], [325, Jee], [325, Jnn], [326, Jee], [326, Jnn], [327, Jee], [327, Jnn], [328, Jee], [328, Jnn], [329, Jee], [329, Jnn], [331, Jee], [331, Jnn], [332, Jee], [332, Jnn], [333, Jee], [333, Jnn], [336, Jee], [336, Jnn], [340, Jee], [340, Jnn]]
Metadata¶
for repo in ['hera_cal', 'hera_qm', 'hera_filters', 'hera_notebook_templates', 'pyuvdata']:
exec(f'from {repo} import __version__')
print(f'{repo}: {__version__}')
hera_cal: 3.6.2.dev110+g0529798 hera_qm: 2.2.0 hera_filters: 0.1.6.dev1+g297dcce
hera_notebook_templates: 0.1.dev936+gdc93cad pyuvdata: 3.0.1.dev70+g283dda3
print(f'Finished execution in {(time.time() - tstart) / 60:.2f} minutes.')
Finished execution in 69.85 minutes.